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BMCBI
2006
137views more  BMCBI 2006»
14 years 9 months ago
Sigma: multiple alignment of weakly-conserved non-coding DNA sequence
Background: Existing tools for multiple-sequence alignment focus on aligning protein sequence or protein-coding DNA sequence, and are often based on extensions to Needleman-Wunsch...
Rahul Siddharthan
JPDC
2000
141views more  JPDC 2000»
14 years 9 months ago
A System for Evaluating Performance and Cost of SIMD Array Designs
: SIMD arrays are likely to become increasingly important as coprocessors in domain specific systems as architects continue to leverage RAM technology in their design. The problem ...
Martin C. Herbordt, Jade Cravy, Renoy Sam, Owais K...
BMCBI
2011
14 years 1 months ago
ShoRAH: estimating the genetic diversity of a mixed sample from next-generation sequencing data
Background: With next-generation sequencing technologies, experiments that were considered prohibitive only a few years ago are now possible. However, while these technologies hav...
Osvaldo Zagordi, Arnab Bhattacharya, Nicholas Erik...
PLDI
2011
ACM
14 years 13 days ago
Automated atomicity-violation fixing
Fixing software bugs has always been an important and timeconsuming process in software development. Fixing concurrency bugs has become especially critical in the multicore era. H...
Guoliang Jin, Linhai Song, Wei Zhang, Shan Lu, Ben...
BMCBI
2010
113views more  BMCBI 2010»
14 years 9 months ago
Improving performance of mammalian microRNA target prediction
Background: MicroRNAs (miRNAs) are single-stranded non-coding RNAs known to regulate a wide range of cellular processes by silencing the gene expression at the protein and/or mRNA...
Hui Liu, Dong Yue, Yidong Chen, Shou-Jiang Gao, Yu...