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BMCBI
2007
104views more  BMCBI 2007»
14 years 11 months ago
Identification of putative regulatory upstream ORFs in the yeast genome using heuristics and evolutionary conservation
Background: The translational efficiency of an mRNA can be modulated by upstream open reading frames (uORFs) present in certain genes. A uORF can attenuate translation of the main...
Marija Cvijovic, Daniel Dalevi, Elizabeth Bilsland...
WABI
2004
Springer
106views Bioinformatics» more  WABI 2004»
15 years 5 months ago
Suboptimal Local Alignments Across Multiple Scoring Schemes
Abstract. Sequence alignment algorithms have a long standing tradition in bioinformatics. In this paper, we formulate an extension to existing local alignment algorithms: local ali...
Morris Michael, Christoph Dieterich, Jens Stoye
JDA
2007
156views more  JDA 2007»
14 years 11 months ago
A linear time algorithm for the inversion median problem in circular bacterial genomes
In the median problem, we are given a distance or dissimilarity measure d, three genomes G1, G2, and G3, and we want to find a genome G (a median) such that the sum 3 i=1 d(G, Gi...
Enno Ohlebusch, Mohamed Ibrahim Abouelhoda, Kathri...
ISMIR
2004
Springer
124views Music» more  ISMIR 2004»
15 years 5 months ago
A Comparison of Rhythmic Similarity Measures
Measuring the similarity between rhythms is a fundamental problem in computational music theory, with many applications such as music information retrieval and copyright infringem...
Godfried T. Toussaint
BMCBI
2010
135views more  BMCBI 2010»
14 years 11 months ago
GIGA: a simple, efficient algorithm for gene tree inference in the genomic age
Background: Phylogenetic relationships between genes are not only of theoretical interest: they enable us to learn about human genes through the experimental work on their relativ...
Paul D. Thomas