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SNPD
2004
15 years 1 months ago
Using extended phylogenetc profiles and support vector machines for protein family classification
We proposed a new approach to compare profiles when the correlations among attributes can be represented as a tree. To account for these correlations, the profile is extended with...
Kishore Narra, Li Liao
ISMB
1997
15 years 1 months ago
RIFLE: Rapid Identification of Microorganisms by Fragment Length Evaluation
Biological macromoleculesrepresent a valuable source of informationfor the identification and phylogenetic classification of microorganisms.Oneof the mostcommonlyused macromolecul...
Henning Hermjakob, Robert Giegerich, Walter Arnold
COCOA
2008
Springer
15 years 1 months ago
Simplicial Powers of Graphs
In a finite simple undirected graph, a vertex is simplicial if its neighborhood is a clique. We say that, for k 2, a graph G = (VG, EG) is the k-simplicial power of a graph H = (V...
Andreas Brandstädt, Van Bang Le
BMCBI
2010
100views more  BMCBI 2010»
14 years 11 months ago
Scaffold filling, contig fusion and comparative gene order inference
Background: There has been a trend in increasing the phylogenetic scope of genome sequencing without finishing the sequence of the genome. Increasing numbers of genomes are being ...
Adriana Muñoz, Chunfang Zheng, Qian Zhu, Vi...
BMCBI
2008
96views more  BMCBI 2008»
14 years 11 months ago
Novel methodology for construction and pruning of quasi-median networks
Background: Visualising the evolutionary history of a set of sequences is a challenge for molecular phylogenetics. One approach is to use undirected graphs, such as median network...
Sarah C. Ayling, Terence A. Brown