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» Columba: an integrated database of proteins, structures, and...
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BMCBI
2006
103views more  BMCBI 2006»
14 years 9 months ago
Domain-based small molecule binding site annotation
Background: Accurate small molecule binding site information for a protein can facilitate studies in drug docking, drug discovery and function prediction, but small molecule bindi...
Kevin A. Snyder, Howard J. Feldman, Michel Dumonti...
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BMCBI
2002
137views more  BMCBI 2002»
14 years 9 months ago
ORFer - retrieval of protein sequences and open reading frames from GenBank and storage into relational databases or text files
Background: Functional genomics involves the parallel experimentation with large sets of proteins. This requires management of large sets of open reading frames as a prerequisite ...
Konrad Büssow, Steve Hoffmann, Volker Sievert
BMCBI
2005
292views more  BMCBI 2005»
14 years 9 months ago
Atlas - a data warehouse for integrative bioinformatics
Background: We present a biological data warehouse called Atlas that locally stores and integrates biological sequences, molecular interactions, homology information, functional a...
Sohrab P. Shah, Yong Huang, Tao Xu, Macaire M. S. ...
APBC
2003
138views Bioinformatics» more  APBC 2003»
14 years 11 months ago
A New Approach to Protein Structure and Function Analysis Using Semi-structured Databases
The development of high-throughput genome sequencing and protein structure determination techniques have provided researchers with a wealth of biological data. Integrated analysis...
William M. Shui, Raymond K. Wong, Stephen C. Graha...
ISBI
2002
IEEE
15 years 10 months ago
Image content-based retrieval and automated interpretation of fluorescence microscope images via the protein subcellular locatio
We describe the Protein Subcellular Location Image Database (PSLID), which collects and structures 2-D through 5-D fluorescence microscope images, annotations, and derived feature...
Kai Huang, Jennifer Lin, James A. Gajnak, Robert F...