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» Combinations of TRAP Based Systems
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BMCBI
2006
95views more  BMCBI 2006»
14 years 10 months ago
XcisClique: analysis of regulatory bicliques
Background: Modeling of cis-elements or regulatory motifs in promoter (upstream) regions of genes is a challenging computational problem. In this work, set of regulatory motifs si...
Amrita Pati, Cecilia Vasquez-Robinet, Lenwood S. H...
CGF
2006
202views more  CGF 2006»
14 years 10 months ago
GPU-based Collision Detection for Deformable Parameterized Surfaces
Based on the potential of current programmable GPUs, recently several approaches were developed that use the GPU to calculate deformations of surfaces like the folding of cloth or...
Alexander Greß, Michael Guthe, Reinhard Klei...
BMCBI
2007
167views more  BMCBI 2007»
14 years 10 months ago
A stochastic differential equation model for transcriptional regulatory networks
Background: This work explores the quantitative characteristics of the local transcriptional regulatory network based on the availability of time dependent gene expression data se...
Adriana Climescu-Haulica, Michelle D. Quirk
BMCBI
2007
136views more  BMCBI 2007»
14 years 10 months ago
Prediction of tissue-specific cis-regulatory modules using Bayesian networks and regression trees
Background: In vertebrates, a large part of gene transcriptional regulation is operated by cisregulatory modules. These modules are believed to be regulating much of the tissue-sp...
Xiaoyu Chen, Mathieu Blanchette
ISCA
2006
IEEE
144views Hardware» more  ISCA 2006»
14 years 10 months ago
Conditional Memory Ordering
Conventional relaxed memory ordering techniques follow a proactive model: at a synchronization point, a processor makes its own updates to memory available to other processors by ...
Christoph von Praun, Harold W. Cain, Jong-Deok Cho...