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INFORMATICALT
2010
142views more  INFORMATICALT 2010»
14 years 10 months ago
Complexity Estimation of Genetic Sequences Using Information-Theoretic and Frequency Analysis Methods
The genetic information in cells is stored in DNA sequences, represented by a string of four letters, each corresponding to a definite type of nucleotides. Genomic DNA sequences a...
Robertas Damasevicius
CPM
2006
Springer
112views Combinatorics» more  CPM 2006»
15 years 3 months ago
Local Alignment of RNA Sequences with Arbitrary Scoring Schemes
Abstract. Local similarity is an important tool in comparative analysis of biological sequences, and is therefore well studied. In particular, the Smith-Waterman technique and its ...
Rolf Backofen, Danny Hermelin, Gad M. Landau, Oren...
RSA
2011
102views more  RSA 2011»
14 years 6 months ago
Dependent random choice
: We describe a simple and yet surprisingly powerful probabilistic technique which shows how to find in a dense graph a large subset of vertices in which all (or almost all) small...
Jacob Fox, Benny Sudakov
CPM
2001
Springer
111views Combinatorics» more  CPM 2001»
15 years 4 months ago
Multiple Pattern Matching Algorithms on Collage System
Abstract. Compressed pattern matching is one of the most active topics in string matching. The goal is to find all occurrences of a pattern in a compressed text without decompress...
Takuya Kida, Tetsuya Matsumoto, Masayuki Takeda, A...
ICALP
2001
Springer
15 years 4 months ago
Hidden Pattern Statistics
Abstract. We consider the sequence comparison problem, also known as “hidden pattern” problem, where one searches for a given subsequence in a text (rather than a string unders...
Philippe Flajolet, Yves Guivarc'h, Wojciech Szpank...