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126
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COCOON
1997
Springer
15 years 7 months ago
Edge and Node Searching Problems on Trees
In this paper, we consider the edge searching and node searching problems on trees. Given a tree, we show a transformation from an optimal node-search strategy to an optimal edge-...
Sheng-Lung Peng, Chin-Wen Ho, Tsan-sheng Hsu, Ming...
CPM
1994
Springer
123views Combinatorics» more  CPM 1994»
15 years 7 months ago
Computing all Suboptimal Alignments in Linear Space
Recently, a new compact representation for suboptimal alignments was proposed by Naor and Brutlag (1993). The kernel of that representation is a minimal directed acyclic graph (DAG...
Kun-Mao Chao
119
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CPM
2007
Springer
134views Combinatorics» more  CPM 2007»
15 years 7 months ago
Efficient Computation of Substring Equivalence Classes with Suffix Arrays
This paper considers enumeration of substring equivalence classes introduced by Blumer et al. [1]. They used the equivalence classes to define an index structure called compact dir...
Kazuyuki Narisawa, Shunsuke Inenaga, Hideo Bannai,...
122
Voted
CPM
2007
Springer
73views Combinatorics» more  CPM 2007»
15 years 7 months ago
Move-to-Front, Distance Coding, and Inversion Frequencies Revisited
Move-to-Front, Distance Coding and Inversion Frequencies are three simple and effective techniques used to process the output of the Burrows-Wheeler Transform. In this paper we pr...
Travis Gagie, Giovanni Manzini
142
Voted
COCOON
2006
Springer
15 years 7 months ago
Reconciling Gene Trees with Apparent Polytomies
We consider the problem of reconciling gene trees with a species tree based on the widely accepted Gene Duplication model from Goodman et al. Current algorithms that solve this pro...
Wen-Chieh Chang 0002, Oliver Eulenstein