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CPM
2000
Springer
124views Combinatorics» more  CPM 2000»
15 years 2 months ago
Indexing Text with Approximate q-Grams
We present a new index for approximate string matching. The index collects text q-samples, that is, disjoint text substrings of length q, at fixed intervals and stores their posi...
Gonzalo Navarro, Erkki Sutinen, Jani Tanninen, Jor...
CPM
2000
Springer
143views Combinatorics» more  CPM 2000»
15 years 2 months ago
A Boyer-Moore Type Algorithm for Compressed Pattern Matching
Abstract. We apply the Boyer–Moore technique to compressed pattern matching for text string described in terms of collage system, which is a formal framework that captures variou...
Yusuke Shibata, Tetsuya Matsumoto, Masayuki Takeda...
COCOON
1999
Springer
15 years 2 months ago
Distributionally-Hard Languages
Cai and Selman [CS99] defined a modification of Levin’s notion of average polynomial time and proved, for every P-bi-immune language L and every polynomial-time computable dis...
Lance Fortnow, Aduri Pavan, Alan L. Selman
CPM
1999
Springer
99views Combinatorics» more  CPM 1999»
15 years 2 months ago
On the Complexity of Positional Sequencing by Hybridization
In sequencing by hybridization (SBH), one has to reconstruct a sequence from its l-long substrings. SBH was proposed as an alternative to gel-based DNA sequencing approaches, but ...
Amir Ben-Dor, Itsik Pe'er, Ron Shamir, Roded Shara...
CPM
1999
Springer
92views Combinatorics» more  CPM 1999»
15 years 2 months ago
Physical Mapping with Repeated Probes: The Hypergraph Superstring Problem
We focus on the combinatorial analysis of physical mapping with repeated probes. We present computational complexity results, and we describe and analyze an algorithmic strategy. W...
Serafim Batzoglou, Sorin Istrail