We present a new index for approximate string matching. The index collects text q-samples, that is, disjoint text substrings of length q, at fixed intervals and stores their posi...
Gonzalo Navarro, Erkki Sutinen, Jani Tanninen, Jor...
Abstract. We apply the Boyer–Moore technique to compressed pattern matching for text string described in terms of collage system, which is a formal framework that captures variou...
Cai and Selman [CS99] defined a modification of Levin’s notion of average polynomial time and proved, for every P-bi-immune language L and every polynomial-time computable dis...
In sequencing by hybridization (SBH), one has to reconstruct a sequence from its l-long substrings. SBH was proposed as an alternative to gel-based DNA sequencing approaches, but ...
Amir Ben-Dor, Itsik Pe'er, Ron Shamir, Roded Shara...
We focus on the combinatorial analysis of physical mapping with repeated probes. We present computational complexity results, and we describe and analyze an algorithmic strategy. W...