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COCOON
2005
Springer
15 years 3 months ago
Algorithmic and Complexity Issues of Three Clustering Methods in Microarray Data Analysis
The complexity, approximation and algorithmic issues of several clustering problems are studied. These non-traditional clustering problems arise from recent studies in microarray ...
Jinsong Tan, Kok Seng Chua, Louxin Zhang
CPM
2005
Springer
106views Combinatorics» more  CPM 2005»
15 years 3 months ago
An Optimal Algorithm for Online Square Detection
A square is the concatenation of two identical non-empty strings. Let S be the input string which is given character by character. Let m be the (unknown) smallest integer such that...
Gen-Huey Chen, Jin-Ju Hong, Hsueh-I Lu
CPM
2005
Springer
123views Combinatorics» more  CPM 2005»
15 years 3 months ago
A Simple Fast Hybrid Pattern-Matching Algorithm
Abstract. The Knuth-Morris-Pratt (KMP) pattern-matching algorithm guarantees both independence from alphabet size and worst-case execution time linear in the pattern length; on the...
Frantisek Franek, Christopher G. Jennings, William...
CPM
2005
Springer
97views Combinatorics» more  CPM 2005»
15 years 3 months ago
On the Complexity of Sparse Exon Assembly
Gene structure prediction is one of the most important problems in computational molecular biology. It involves two steps: the first is finding the evidence (e.g. predicting spl...
Carmel Kent, Gad M. Landau, Michal Ziv-Ukelson
CPM
2005
Springer
105views Combinatorics» more  CPM 2005»
15 years 3 months ago
Reducing the Size of NFAs by Using Equivalences and Preorders
Abstract. The efficiency of regular expression matching algorithms depends very much on the size of the nondeterministic finite automata (NFA) obtained from regular expressions. R...
Lucian Ilie, Roberto Solis-Oba, Sheng Yu