In this paper we propose new solution methods for designing tag sets for use in universal DNA arrays. First, we give integer linear programming formulations for two previous formal...
An octree is a recursive partition of the unit cube, such that in each step a cube is subdivided into eight smaller cubes. Those cubes that are not further subdivided are the leave...
For a set of rooted, unordered, distinctly leaf-labeled trees, the NP-hard maximum agreement subtree problem (MAST) asks for a tree contained (up to isomorphism or homeomorphism) i...
Anders Dessmark, Jesper Jansson, Andrzej Lingas, E...
Given a matrix X composed of symbols, a bicluster is a submatrix of X obtained by removing some of the rows and some of the columns of X in such a way that each row of what is lef...
Stefano Lonardi, Wojciech Szpankowski, Qiaofeng Ya...
Abstract. We consider the problem of sorting linear and circular permutations and 0/1 sequences by reversals in a length-sensitive cost model. We extend the results on sorting by l...
Firas Swidan, Michael A. Bender, Dongdong Ge, Sima...