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CPM
1993
Springer
125views Combinatorics» more  CPM 1993»
15 years 1 months ago
Detecting False Matches in String Matching Algorithms
Consider a text string of length n, a pattern string of length m, and a match vector of length n which declares each location in the text to be either a mismatch (the pattern does ...
S. Muthukrishnan
CPM
1993
Springer
154views Combinatorics» more  CPM 1993»
15 years 1 months ago
On Suboptimal Alignments of Biological Sequences
It is widely accepted that the optimal alignment between a pair of proteins or nucleic acid sequences that minimizes the edit distance may not necessarily re ect the correct biolog...
Dalit Naor, Douglas L. Brutlag
COCOON
2006
Springer
15 years 1 months ago
Reconstructing Evolution of Natural Languages: Complexity and Parameterized Algorithms
In a recent article, Nakhleh, Ringe and Warnow introduced perfect phylogenetic networks--a model of language evolution where languages do not evolve via clean speciation--and form...
Iyad A. Kanj, Luay Nakhleh, Ge Xia
CPM
2006
Springer
112views Combinatorics» more  CPM 2006»
15 years 1 months ago
Local Alignment of RNA Sequences with Arbitrary Scoring Schemes
Abstract. Local similarity is an important tool in comparative analysis of biological sequences, and is therefore well studied. In particular, the Smith-Waterman technique and its ...
Rolf Backofen, Danny Hermelin, Gad M. Landau, Oren...
CPM
2006
Springer
145views Combinatorics» more  CPM 2006»
15 years 1 months ago
Approximation of RNA Multiple Structural Alignment
Abstract. In the context of non-coding RNA (ncRNA) multiple structural alignment, Davydov and Batzoglou introduced in [7] the problem of finding the largest nested linear graph tha...
Marcin Kubica, Romeo Rizzi, Stéphane Vialet...