Consider a text string of length n, a pattern string of length m, and a match vector of length n which declares each location in the text to be either a mismatch (the pattern does ...
It is widely accepted that the optimal alignment between a pair of proteins or nucleic acid sequences that minimizes the edit distance may not necessarily re
ect the correct biolog...
In a recent article, Nakhleh, Ringe and Warnow introduced perfect phylogenetic networks--a model of language evolution where languages do not evolve via clean speciation--and form...
Abstract. Local similarity is an important tool in comparative analysis of biological sequences, and is therefore well studied. In particular, the Smith-Waterman technique and its ...
Rolf Backofen, Danny Hermelin, Gad M. Landau, Oren...
Abstract. In the context of non-coding RNA (ncRNA) multiple structural alignment, Davydov and Batzoglou introduced in [7] the problem of finding the largest nested linear graph tha...