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COCOON
2007
Springer
15 years 3 months ago
Can a Graph Have Distinct Regular Partitions?
The regularity lemma of Szemer´edi gives a concise approximate description of a graph via a so called regular-partition of its vertex set. In this paper we address the following ...
Noga Alon, Asaf Shapira, Uri Stav
67
Voted
CPM
2007
Springer
101views Combinatorics» more  CPM 2007»
15 years 3 months ago
Improved Algorithms for Inferring the Minimum Mosaic of a Set of Recombinants
Abstract. Detecting historical recombination is an important computational problem which has received great attention recently. Due to recombination, input sequences form a mosaic,...
Yufeng Wu, Dan Gusfield
CPM
2007
Springer
99views Combinatorics» more  CPM 2007»
15 years 3 months ago
Speeding Up HMM Decoding and Training by Exploiting Sequence Repetitions
We present a method to speed up the dynamic program algorithms used for solving the HMM decoding and training problems for discrete time-independent HMMs. We discuss the applicatio...
Shay Mozes, Oren Weimann, Michal Ziv-Ukelson
CPM
2007
Springer
94views Combinatorics» more  CPM 2007»
15 years 3 months ago
Finding Witnesses by Peeling
In the k-matches problem, we are given a pattern and a text, and for each text location, the desired output consists of all aligned matching characters if there are k or fewer of ...
Yonatan Aumann, Moshe Lewenstein, Noa Lewenstein, ...
CPM
2007
Springer
102views Combinatorics» more  CPM 2007»
15 years 3 months ago
Non-breaking Similarity of Genomes with Gene Repetitions
Abstract. In this paper we define a new similarity measure, the nonbreaking similarity, which is the complement of the famous breakpoint distance between genomes (in general, betw...
Zhixiang Chen, Bin Fu, Jinhui Xu, Bo-Ting Yang, Zh...