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COCOON
2007
Springer
15 years 6 months ago
Can a Graph Have Distinct Regular Partitions?
The regularity lemma of Szemer´edi gives a concise approximate description of a graph via a so called regular-partition of its vertex set. In this paper we address the following ...
Noga Alon, Asaf Shapira, Uri Stav
CPM
2007
Springer
101views Combinatorics» more  CPM 2007»
15 years 6 months ago
Improved Algorithms for Inferring the Minimum Mosaic of a Set of Recombinants
Abstract. Detecting historical recombination is an important computational problem which has received great attention recently. Due to recombination, input sequences form a mosaic,...
Yufeng Wu, Dan Gusfield
CPM
2007
Springer
99views Combinatorics» more  CPM 2007»
15 years 6 months ago
Speeding Up HMM Decoding and Training by Exploiting Sequence Repetitions
We present a method to speed up the dynamic program algorithms used for solving the HMM decoding and training problems for discrete time-independent HMMs. We discuss the applicatio...
Shay Mozes, Oren Weimann, Michal Ziv-Ukelson
CPM
2007
Springer
94views Combinatorics» more  CPM 2007»
15 years 6 months ago
Finding Witnesses by Peeling
In the k-matches problem, we are given a pattern and a text, and for each text location, the desired output consists of all aligned matching characters if there are k or fewer of ...
Yonatan Aumann, Moshe Lewenstein, Noa Lewenstein, ...
CPM
2007
Springer
102views Combinatorics» more  CPM 2007»
15 years 6 months ago
Non-breaking Similarity of Genomes with Gene Repetitions
Abstract. In this paper we define a new similarity measure, the nonbreaking similarity, which is the complement of the famous breakpoint distance between genomes (in general, betw...
Zhixiang Chen, Bin Fu, Jinhui Xu, Bo-Ting Yang, Zh...