The regularity lemma of Szemer´edi gives a concise approximate description of a graph via a so called regular-partition of its vertex set. In this paper we address the following ...
Abstract. Detecting historical recombination is an important computational problem which has received great attention recently. Due to recombination, input sequences form a mosaic,...
We present a method to speed up the dynamic program algorithms used for solving the HMM decoding and training problems for discrete time-independent HMMs. We discuss the applicatio...
In the k-matches problem, we are given a pattern and a text, and for each text location, the desired output consists of all aligned matching characters if there are k or fewer of ...
Abstract. In this paper we define a new similarity measure, the nonbreaking similarity, which is the complement of the famous breakpoint distance between genomes (in general, betw...
Zhixiang Chen, Bin Fu, Jinhui Xu, Bo-Ting Yang, Zh...