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» Combined Gene Selection Methods for Microarray Data Analysis
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VLDB
2004
ACM
143views Database» more  VLDB 2004»
15 years 8 months ago
GPX: Interactive Mining of Gene Expression Data
Discovering co-expressed genes and coherent expression patterns in gene expression data is an important data analysis task in bioinformatics research and biomedical applications. ...
Daxin Jiang, Jian Pei, Aidong Zhang
BMCBI
2005
120views more  BMCBI 2005»
15 years 2 months ago
Harshlight: a "corrective make-up" program for microarray chips
Background: Microscopists are familiar with many blemishes that fluorescence images can have due to dust and debris, glass flaws, uneven distribution of fluids or surface coatings...
Mayte Suárez-Fariñas, Maurizio Pelle...
BMCBI
2006
127views more  BMCBI 2006»
15 years 3 months ago
Using local gene expression similarities to discover regulatory binding site modules
Background: We present an approach designed to identify gene regulation patterns using sequence and expression data collected for Saccharomyces cerevisae. Our main goal is to rela...
Bartek Wilczynski, Torgeir R. Hvidsten, Andriy Kry...
ECML
2006
Springer
15 years 6 months ago
Evaluating Feature Selection for SVMs in High Dimensions
We perform a systematic evaluation of feature selection (FS) methods for support vector machines (SVMs) using simulated high-dimensional data (up to 5000 dimensions). Several findi...
Roland Nilsson, José M. Peña, Johan ...
ALMOB
2007
111views more  ALMOB 2007»
15 years 3 months ago
Transcriptional regulatory network discovery via multiple method integration: application to e. coli K12
Motivation: Transcriptional regulatory network (TRN) discovery from one method (e.g. microarray analysis, gene ontology, phylogenic similarity) does not seem feasible due to lack ...
Jingjun Sun, Kagan Tuncay, Alaa Abi Haidar, Lisa E...