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» Combining Affymetrix microarray results
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BMCBI
2007
168views more  BMCBI 2007»
15 years 14 days ago
GOSim - an R-package for computation of information theoretic GO similarities between terms and gene products
Background: With the increased availability of high throughput data, such as DNA microarray data, researchers are capable of producing large amounts of biological data. During the...
Holger Fröhlich, Nora Speer, Annemarie Poustk...
BMCBI
2008
110views more  BMCBI 2008»
15 years 14 days ago
Testing for treatment effects on gene ontology
In studies that use DNA arrays to assess changes in gene expression, it is preferable to measure the significance of treatment effects on a group of genes from a pathway or functi...
Taewon Lee, Varsha G. Desai, Cruz Velasco, Robert ...
87
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IWANN
2009
Springer
15 years 7 months ago
Bayesian Joint Estimation of CN and LOH Aberrations
SNP-microarrays are able to measure simultaneously both copy number and genotype at several single nucleotide polymorphism positions. Combining the two data, it is possible to bett...
Paola M. V. Rancoita, Marcus Hutter, Francesco Ber...
FPL
2003
Springer
128views Hardware» more  FPL 2003»
15 years 5 months ago
Case Study of a Functional Genomics Application
Although microarrays are already having a tremendous impact on biomedical science, they still present great computational challenges. We examine a particular problem involving the...
Tom Van Court, Martin C. Herbordt, Richard J. Bart...
87
Voted
BMCBI
2007
111views more  BMCBI 2007»
15 years 11 days ago
CATMA, a comprehensive genome-scale resource for silencing and transcript profiling of Arabidopsis genes
Background: The Complete Arabidopsis Transcript MicroArray (CATMA) initiative combines the efforts of laboratories in eight European countries [1] to deliver gene-specific sequenc...
Gert Sclep, Joke Allemeersch, Robin Liechti, Bj&ou...