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BMCBI
2008
131views more  BMCBI 2008»
15 years 5 months ago
Modifying the DPClus algorithm for identifying protein complexes based on new topological structures
Background: Identification of protein complexes is crucial for understanding principles of cellular organization and functions. As the size of protein-protein interaction set incr...
Min Li, Jianer Chen, Jianxin Wang, Bin Hu, Gang Ch...
154
Voted
WEA
2005
Springer
176views Algorithms» more  WEA 2005»
15 years 10 months ago
High-Performance Algorithm Engineering for Large-Scale Graph Problems and Computational Biology
Abstract. Many large-scale optimization problems rely on graph theoretic solutions; yet high-performance computing has traditionally focused on regular applications with high degre...
David A. Bader
GECCO
2003
Springer
132views Optimization» more  GECCO 2003»
15 years 10 months ago
Circuit Bipartitioning Using Genetic Algorithm
Abstract. In this paper, we propose a hybrid genetic algorithm for partitioning a VLSI circuit graph into two disjoint graphs of minimum cut size. The algorithm includes a local op...
Jong-Pil Kim, Byung Ro Moon
IPPS
1996
IEEE
15 years 9 months ago
Practical Parallel Algorithms for Dynamic Data Redistribution, Median Finding, and Selection
A common statistical problem is that of nding the median element in a set of data. This paper presents a fastand portable parallel algorithm for nding the median given a set of el...
David A. Bader, Joseph JáJá
163
Voted
APPROX
2010
Springer
188views Algorithms» more  APPROX 2010»
15 years 6 months ago
Approximation Algorithms for Reliable Stochastic Combinatorial Optimization
We consider optimization problems that can be formulated as minimizing the cost of a feasible solution wT x over an arbitrary combinatorial feasible set F {0, 1}n . For these pro...
Evdokia Nikolova