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BMCBI
2011
14 years 4 months ago
Removing Noise From Pyrosequenced Amplicons
Background: In many environmental genomics applications a homologous region of DNA from a diverse sample is first amplified by PCR and then sequenced. The next generation sequenci...
Christopher Quince, Anders Lanzén, Russell ...
BMCBI
2011
14 years 4 months ago
A quality metric for homology modeling: the H-factor
Background: The analysis of protein structures provides fundamental insight into most biochemical functions and consequently into the cause and possible treatment of diseases. As ...
Eric di Luccio, Patrice Koehl
BMCBI
2011
14 years 4 months ago
Outer membrane proteins can be simply identified using secondary structure element alignment
Background: Outer membrane proteins (OMPs) are frequently found in the outer membranes of gram-negative bacteria, mitochondria and chloroplasts and have been found to play diverse...
Ren-Xiang Yan, Zhen Chen, Ziding Zhang
CONSTRAINTS
2011
14 years 4 months ago
Solving Steel Mill Slab Problems with constraint-based techniques: CP, LNS, and CBLS
The Steel Mill Slab Problem is an optimization benchmark that has been studied for a long time in the constraint-programming community but was only solved efficiently in the two l...
Pierre Schaus, Pascal Van Hentenryck, Jean-Noë...
CORR
2011
Springer
158views Education» more  CORR 2011»
14 years 4 months ago
SqFreeEVAL: An (almost) optimal real-root isolation algorithm
Let f be a univariate polynomial with real coefficients, f ∈ R[X]. Subdivision algorithms based on algebraic techniques (e.g., Sturm or Descartes methods) are widely used for is...
Michael Burr, Felix Krahmer