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» Comparative Branching-Time Semantics
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GIS
2008
ACM
15 years 5 months ago
Heuristic algorithms for route-search queries over geographical data
In a geographical route search, given search terms, the goal is to find an effective route that (1) starts at a given location, (2) ends at a given location, and (3) travels via...
Yaron Kanza, Eliyahu Safra, Yehoshua Sagiv, Yerach...
BIODATAMINING
2008
135views more  BIODATAMINING 2008»
15 years 4 months ago
Fast Gene Ontology based clustering for microarray experiments
Background: Analysis of a microarray experiment often results in a list of hundreds of diseaseassociated genes. In order to suggest common biological processes and functions for t...
Kristian Ovaska, Marko Laakso, Sampsa Hautaniemi
BMCBI
2010
118views more  BMCBI 2010»
15 years 4 months ago
Walk-weighted subsequence kernels for protein-protein interaction extraction
Background: The construction of interaction networks between proteins is central to understanding the underlying biological processes. However, since many useful relations are exc...
Seonho Kim, Juntae Yoon, Jihoon Yang, Seog Park
BMCBI
2007
134views more  BMCBI 2007»
15 years 4 months ago
Benchmarking natural-language parsers for biological applications using dependency graphs
Background: Interest is growing in the application of syntactic parsers to natural language processing problems in biology, but assessing their performance is difficult because di...
Andrew B. Clegg, Adrian J. Shepherd
BMCBI
2008
121views more  BMCBI 2008»
15 years 4 months ago
OntoDas - a tool for facilitating the construction of complex queries to the Gene Ontology
Background: Ontologies such as the Gene Ontology can enable the construction of complex queries over biological information in a conceptual way, however existing systems to do thi...
Kieran O'Neill, Alexander García Castro, An...