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110
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SDM
2010
SIAM
192views Data Mining» more  SDM 2010»
15 years 2 months ago
Fast and Accurate Gene Prediction by Decision Tree Classification
Gene prediction is one of the most challenging tasks in genome analysis, for which many tools have been developed and are still evolving. In this paper, we present a novel gene pr...
Rong She, Jeffrey Shih-Chieh Chu, Ke Wang, Nanshen...
75
Voted
APBC
2004
15 years 2 months ago
Variable-length Intervals in Homology Search
Fast, accurate, and scalable search techniques for homology searching of large genomic collections are becoming an increasingly important requirement as genomic sequence collectio...
Abhijit Chattaraj, Hugh E. Williams
BMCBI
2010
115views more  BMCBI 2010»
15 years 23 days ago
Non-coding RNA detection methods combined to improve usability, reproducibility and precision
Background: Non-coding RNAs gain more attention as their diverse roles in many cellular processes are discovered. At the same time, the need for efficient computational prediction...
Peter Raasch, Ulf Schmitz, Nadja Patenge, Julio Ve...
92
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BMCBI
2008
105views more  BMCBI 2008»
15 years 23 days ago
Objective and automated protocols for the evaluation of biomedical search engines using No Title Evaluation protocols
Background: The evaluation of information retrieval techniques has traditionally relied on human judges to determine which documents are relevant to a query and which are not. Thi...
Fabien Campagne
83
Voted
BMCBI
2008
108views more  BMCBI 2008»
15 years 23 days ago
Empirical methods for controlling false positives and estimating confidence in ChIP-Seq peaks
Background: High throughput signature sequencing holds many promises, one of which is the ready identification of in vivo transcription factor binding sites, histone modifications...
David A. Nix, Samir J. Courdy, Kenneth M. Boucher