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» Comparative genome assembly
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BIOSTEC
2011
152views Healthcare» more  BIOSTEC 2011»
13 years 9 months ago
A Theoretical Analysis of Scalability of the Parallel Genome Assembly Algorithms
Munib Ahmed, Ishfaq Ahmad, Samee Khan
BMCBI
2007
148views more  BMCBI 2007»
14 years 9 months ago
Toward the automated generation of genome-scale metabolic networks in the SEED
Background: Current methods for the automated generation of genome-scale metabolic networks focus on genome annotation and preliminary biochemical reaction network assembly, but d...
Matthew DeJongh, Kevin Formsma, Paul Boillot, John...
BMCBI
2011
14 years 4 months ago
RAIphy: Phylogenetic classification of metagenomics samples using iterative refinement of relative abundance index profiles
Background: Computational analysis of metagenomes requires the taxonomical assignment of the genome contigs assembled from DNA reads of environmental samples. Because of the diver...
Ozkan U. Nalbantoglu, Samuel F. Way, Steven H. Hin...
BIOCOMP
2007
14 years 11 months ago
xMAN: extreme MApping of oligoNucleotides
Background: The ability to rapidly map millions of oligonucleotide fragments to a reference genome is crucial to many high throughput genomic technologies. Results: We propose an ...
Wei Li, Jason S. Carroll, Myles Brown, X. Shirley ...
93
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ENGL
2007
110views more  ENGL 2007»
14 years 9 months ago
A Comparative Study of Probabilistic and Worst-case Tolerance Synthesis
— The tolerance design directly influences the functionality of products and production costs. Tolerance synthesis is a procedure that distributes assembly tolerances between com...
Jirarat Teeravaraprug