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CSB
2004
IEEE
142views Bioinformatics» more  CSB 2004»
15 years 4 months ago
FastR: Fast Database Search Tool for Non-Coding RNA
The discovery of novel non-coding RNAs has been among the most exciting recent developments in Biology. Yet, many more remain undiscovered. It has been hypothesized that there is ...
Vineet Bafna, Shaojie Zhang
109
Voted
CSB
2004
IEEE
126views Bioinformatics» more  CSB 2004»
15 years 4 months ago
Boosted PRIM with Application to Searching for Oncogenic Pathway of Lung Cancer
Boosted PRIM (Patient Rule Induction Method) is a new algorithm developed for two-class classification problems. PRIM is a variation of those Tree-Based methods ( [4] Ch9.3), seek...
Pei Wang, Young Kim, Jonathan R. Pollack, Robert T...
131
Voted
GCB
2004
Springer
223views Biometrics» more  GCB 2004»
15 years 4 months ago
PoSSuMsearch: Fast and Sensitive Matching of Position Specific Scoring Matrices using Enhanced Suffix Arrays
: In biological sequence analysis, position specific scoring matrices (PSSMs) are widely used to represent sequence motifs. In this paper, we present a new nonheuristic algorithm, ...
Michael Beckstette, Dirk Strothmann, Robert Homann...
138
Voted
GCCB
2006
15 years 4 months ago
Accelerated microRNA-Precursor Detection Using the Smith-Waterman Algorithm on FPGAs
During the last few years more and more functionalities of RNA have been discovered that were previously thought of being carried out by proteins alone. One of the most striking di...
Patrick May, Gunnar W. Klau, Markus Bauer, Thomas ...
109
Voted
AUSAI
2006
Springer
15 years 2 months ago
An Efficient Alternative to SVM Based Recursive Feature Elimination with Applications in Natural Language Processing and Bioinfo
The SVM based Recursive Feature Elimination (RFE-SVM) algorithm is a popular technique for feature selection, used in natural language processing and bioinformatics. Recently it wa...
Justin Bedo, Conrad Sanderson, Adam Kowalczyk