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    BMCBI
    2007
    160views more  BMCBI 2007»
    Establishing a major cause of discrepancy in the calibration of Affymetrix GeneChips
    14 years 9 months ago
    Establishing a major cause of discrepancy in the calibration of Affymetrix GeneChips
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    Background: Affymetrix GeneChips are a popular platform for performing whole-genome experiments on the transcriptome. There are a range of different calibration steps, and users a...
    Andrew P. Harrison, Caroline E. Johnston, Christin...
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    BMCBI
    2007
    164views more  BMCBI 2007»
    SEARCHPATTOOL: a new method for mining the most specific frequent patterns for binding sites with application to prokaryotic DNA
    14 years 9 months ago
    SEARCHPATTOOL: a new method for mining the most specific frequent patterns for binding sites with application to prokaryotic DNA
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    Background: Computational methods to predict transcription factor binding sites (TFBS) based on exhaustive algorithms are guaranteed to find the best patterns but are often limite...
    Fathi Elloumi, Martha Nason
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    BMCBI
    2007
    77views more  BMCBI 2007»
    Effective selection of informative SNPs and classification on the HapMap genotype data
    14 years 9 months ago
    Effective selection of informative SNPs and classification on the HapMap genotype data
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    Background: Since the single nucleotide polymorphisms (SNPs) are genetic variations which determine the difference between any two unrelated individuals, the SNPs can be used to i...
    Nina Zhou, Lipo Wang
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    BMCBI
    2007
    142views more  BMCBI 2007»
    Support Vector Machine-based method for predicting subcellular localization of mycobacterial proteins using evolutionary informa
    14 years 9 months ago
    Support Vector Machine-based method for predicting subcellular localization of mycobacterial proteins using evolutionary informa
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    Background: In past number of methods have been developed for predicting subcellular location of eukaryotic, prokaryotic (Gram-negative and Gram-positive bacteria) and human prote...
    Mamoon Rashid, Sudipto Saha, Gajendra P. S. Raghav...
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    BMCBI
    2007
    101views more  BMCBI 2007»
    Gene expression changes induced by the tumorigenic pyrrolizidine alkaloid riddelliine in liver of Big Blue rats
    14 years 9 months ago
    Gene expression changes induced by the tumorigenic pyrrolizidine alkaloid riddelliine in liver of Big Blue rats
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    Background: Pyrrolizidine alkaloids (PAs) are probably the most common plant constituents that poison livestock, wildlife, and humans worldwide. Riddelliine is isolated from plant...
    Nan Mei, Lei Guo, Ruqing Liu, James C. Fuscoe, Tao...
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