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» Comparative genome assembly
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103
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NAR
2002
80views more  NAR 2002»
15 years 6 days ago
Wanda: a database of duplicated fish genes
Comparative genomics has shown that ray-finned fish (Actinopterygii) contain more copies of many genes than other vertebrates. A large number of these additional genes appear to h...
Yves Van de Peer, John Shawe-Taylor, Jayabalan Jos...
98
Voted
BMCBI
2010
164views more  BMCBI 2010»
15 years 20 days ago
Pan-genome sequence analysis using Panseq: an online tool for the rapid analysis of core and accessory genomic regions
Background: The pan-genome of a bacterial species consists of a core and an accessory gene pool. The accessory genome is thought to be an important source of genetic variability i...
Chad Laing, Cody Buchanan, Eduardo N. Taboada, Yon...
108
Voted
BMCBI
2008
152views more  BMCBI 2008»
15 years 20 days ago
JCoast - A biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes
Background: Current sequencing technologies give access to sequence information for genomes and metagenomes at a tremendous speed. Subsequent data processing is mainly performed b...
Michael Richter, Thierry Lombardot, Ivaylo Kostadi...
CSB
2005
IEEE
109views Bioinformatics» more  CSB 2005»
15 years 6 months ago
Patterns of Gene Deletion following Genome Duplication in Yeast
Whole genome duplication (WGD) is followed by massive duplicate deletion that reorganizes gene adjacencies. We compare the deletion patterns and adjacency reorganization following...
Jake K. Byrnes, Wen-Hsiung Li
95
Voted
CIBCB
2007
IEEE
15 years 7 months ago
An Experimental Evaluation of Inversion-and Transposition-Based Genomic Distances through Simulations
— Rearrangements of genes and other syntenic blocks have become a topic of intensive study by phylogenists, comparative genomicists, and computational biologists: they are a feat...
Moulik Kothari, Bernard M. E. Moret