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» Comparative genome assembly
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149
Voted
EVOW
2010
Springer
15 years 7 months ago
Towards Automatic Detecting of Overlapping Genes - Clustered BLAST Analysis of Viral Genomes
Overlapping genes (encoded on the same DNA strand but in different frames) are thought to be rare and, therefore, were largely neglected in the past. In a test set of 800 viruses ...
Klaus Neuhaus, Daniela Oelke, David Fürst, Si...
CEAS
2006
Springer
15 years 4 months ago
An Adaptive, Semi-Structured Language Model Approach to Spam Filtering on a New Corpus
Motivated by current efforts to construct more realistic spam filtering experimental corpora, we present a newly assembled, publicly available corpus of genuine and unsolicited (s...
Ben Medlock
98
Voted
RECOMB
2006
Springer
16 years 27 days ago
A Parsimony Approach to Genome-Wide Ortholog Assignment
The assignment of orthologous genes between a pair of genomes is a fundamental and challenging problem in comparative genomics, since many computational methods for solving various...
Zheng Fu, Xin Chen, Vladimir Vacic, Peng Nan, Yang...
103
Voted
CIBCB
2008
IEEE
15 years 7 months ago
An information theoretic approach for the discovery of irregular and repetitive patterns in genomic data
sequence content at an abstract level and offers novel ways to examine the information contained in them. Our approach is an information theoretic search process which uses patter...
Willard Davis, Ananth Kalyanaraman, Diane J. Cook
BIOSURVEILLANCE
2007
Springer
15 years 6 months ago
Detecting Conserved RNA Secondary Structures in Viral Genomes: The RADAR Approach
Abstract. Conserved regions, or motifs, present among RNA secondary structures serve as a useful indicator for predicting the functionality of the RNA molecules. Automated detectio...
Mugdha Khaladkar, Jason T. L. Wang