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» Comparative genome assembly
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RECOMB
2001
Springer
15 years 1 months ago
The greedy path-merging algorithm for sequence assembly
Two different approaches to determining the human genome are currently being pursued: one is the “clone-by-clone” approach, employed by the publicly-funded Human Genome Proje...
Daniel H. Huson, Knut Reinert, Eugene W. Myers
BMCBI
2010
148views more  BMCBI 2010»
14 years 9 months ago
Calling SNPs without a reference sequence
Background: The most common application for the next-generation sequencing technologies is resequencing, where short reads from the genome of an individual are aligned to a refere...
Aakrosh Ratan, Yu Zhang, Vanessa M. Hayes, Stephan...
NAR
2007
113views more  NAR 2007»
14 years 9 months ago
The UCSC genome browser database: update 2007
The University of California, Santa Cruz Genome Browser Database contains, as of September 2006, sequence and annotation data for the genomes of 13 vertebrate and 19 invertebrate ...
Robert M. Kuhn, Donna Karolchik, Ann S. Zweig, Hea...
BMCBI
2004
96views more  BMCBI 2004»
14 years 9 months ago
GeneOrder3.0: Software for comparing the order of genes in pairs of small bacterial genomes
Background: An increasing number of whole viral and bacterial genomes are being sequenced and deposited in public databases. In parallel to the mounting interest in whole genomes,...
Srikanth Celamkoti, Sashidhara Kundeti, Anjan Purk...
BMCBI
2008
99views more  BMCBI 2008»
14 years 9 months ago
Multiple organism algorithm for finding ultraconserved elements
Background: Ultraconserved elements are nucleotide or protein sequences with 100% identity (no mismatches, insertions, or deletions) in the same organism or between two or more or...
Scott Christley, Neil F. Lobo, Gregory R. Madey