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» Comparative genome assembly
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SC
2003
ACM
15 years 5 months ago
A Million-Fold Speed Improvement in Genomic Repeats Detection
This paper presents a novel, parallel algorithm for generating top alignments. Top alignments are used for finding internal repeats in biological sequences like proteins and gene...
John W. Romein, Jaap Heringa, Henri E. Bal
TREC
2004
15 years 2 months ago
The GUC Goes to TREC 2004: Using Whole or Partial Documents for Retrieval and Classification in the Genomics Track
We were interested in examining the relative effect of using parts of the documents, different combinations of parts of the documents, or whole documents on retrieval and classifi...
Kareem Darwish, Amgad Madkour
RECOMB
2003
Springer
16 years 27 days ago
Finding recurrent sources in sequences
Many genomic sequences and, more generally, (multivariate) time series display tremendous variability. However, often it is reasonable to assume that the sequence is actually gene...
Aristides Gionis, Heikki Mannila
118
Voted
BIOCOMP
2006
15 years 2 months ago
Data Mining of ESTs for Genetic Improvement of Salt Tolerance in Wheat
A total of 4,131 expressed sequence tags (ESTs) were selected from wheat EST database (http://wheat.pw.usda.gov/cgi-bin/westsql/est_lib.cgi.) to identify genic regions differing a...
Meral Unal, Ismail Cakmak, Yildiz Aydin, Aysen Yum...
78
Voted
BMCBI
2010
99views more  BMCBI 2010»
15 years 22 days ago
Assignment of chromosomal locations for unassigned SNPs/scaffolds based on pair-wise linkage disequilibrium estimates
Background: Recent developments of high-density SNP chips across a number of species require accurate genetic maps. Despite rapid advances in genome sequence assembly and availabi...
Mehar S. Khatkar, Matthew Hobbs, Markus Neuditschk...