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» Comparative modeling without implicit sequence alignments
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NAR
2007
136views more  NAR 2007»
14 years 11 months ago
DBAli tools: mining the protein structure space
The DBAli tools use a comprehensive set of structural alignments in the DBAli database to leverage the structural information deposited in the Protein Data Bank (PDB). These tools...
Marc A. Martí-Renom, Ursula Pieper, Mallur ...
LICS
1994
IEEE
15 years 4 months ago
Subtyping and Parametricity
In this paper we study the interaction of subtyping and parametricity. We describe a logic for a programming language with parametric polymorphism and subtyping. The logic support...
Gordon D. Plotkin, Martín Abadi, Luca Carde...
ICASSP
2011
IEEE
14 years 3 months ago
EM-style optimization of hidden conditional random fields for grapheme-to-phoneme conversion
We have recently proposed an EM-style algorithm to optimize log-linear models with hidden variables. In this paper, we use this algorithm to optimize a hidden conditional random ï...
Georg Heigold, Stefan Hahn, Patrick Lehnen, Herman...
BMCBI
2008
135views more  BMCBI 2008»
14 years 12 months ago
Functional site prediction selects correct protein models
Background: The prediction of protein structure can be facilitated by the use of constraints based on a knowledge of functional sites. Without this information it is still possibl...
Vijayalakshmi Chelliah, William R. Taylor
BMCBI
2006
98views more  BMCBI 2006»
14 years 12 months ago
Quantitative comparison of EST libraries requires compensation for systematic biases in cDNA generation
Background: Publicly accessible EST libraries contain valuable information that can be utilized for studies of tissue-specific gene expression and processing of individual genes. ...
Donglin Liu, Joel H. Graber