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» Comparative modeling without implicit sequence alignments
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SPIRE
2010
Springer
14 years 9 months ago
Identifying SNPs without a Reference Genome by Comparing Raw Reads
Next generation sequencing (NGS) technologies are being applied to many fields of biology, notably to survey the polymorphism across individuals of a species. However, while single...
Pierre Peterlongo, Nicolas Schnel, Nadia Pisanti, ...
BMCBI
2010
138views more  BMCBI 2010»
14 years 12 months ago
Sigma-2: Multiple sequence alignment of non-coding DNA via an evolutionary model
Background: While most multiple sequence alignment programs expect that all or most of their input is known to be homologous, and penalise insertions and deletions, this is not a ...
Gayathri Jayaraman, Rahul Siddharthan
BMCBI
2005
122views more  BMCBI 2005»
14 years 11 months ago
Bayesian coestimation of phylogeny and sequence alignment
Background: Two central problems in computational biology are the determination of the alignment and phylogeny of a set of biological sequences. The traditional approach to this p...
Gerton Lunter, István Miklós, Alexei...
ACL
2012
13 years 2 months ago
Machine Translation without Words through Substring Alignment
In this paper, we demonstrate that accurate machine translation is possible without the concept of “words,” treating MT as a problem of transformation between character string...
Graham Neubig, Taro Watanabe, Shinsuke Mori, Tatsu...
ACL
2009
14 years 9 months ago
A non-contiguous Tree Sequence Alignment-based Model for Statistical Machine Translation
The tree sequence based translation model allows the violation of syntactic boundaries in a rule to capture non-syntactic phrases, where a tree sequence is a contiguous sequence o...
Jun Sun, Min Zhang, Chew Lim Tan