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» Comparing Networks from a Data Analysis Perspective
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BMCBI
2011
14 years 9 months ago
Multithreaded comparative RNA secondary structure prediction using stochastic context-free grammars
Background: The prediction of the structure of large RNAs remains a particular challenge in bioinformatics, due to the computational complexity and low levels of accuracy of state...
Zsuzsanna Sukosd, Bjarne Knudsen, Morten Vaerum, J...
BMCBI
2010
133views more  BMCBI 2010»
15 years 3 months ago
New components of the Dictyostelium PKA pathway revealed by Bayesian analysis of expression data
Background: Identifying candidate genes in genetic networks is important for understanding regulation and biological function. Large gene expression datasets contain relevant info...
Anup Parikh, Eryong Huang, Christopher Dinh, Blaz ...
BMCBI
2006
128views more  BMCBI 2006»
15 years 3 months ago
Comparative assessment of performance and genome dependence among phylogenetic profiling methods
Background: The rapidly increasing speed with which genome sequence data can be generated will be accompanied by an exponential increase in the number of sequenced eukaryotes. Wit...
Evan S. Snitkin, Adam M. Gustafson, Joseph C. Mell...
CIDM
2007
IEEE
15 years 9 months ago
GAIS: A Method for Detecting Interleaved Sequential Patterns from Imperfect Data
— This paper introduces a novel method, GAIS, for detecting interleaved sequential patterns from databases. A case, where data is of low quality and has errors is considered. Pat...
Marja Ruotsalainen, Timo Ala-Kleemola, Ari Visa
WILF
2005
Springer
194views Fuzzy Logic» more  WILF 2005»
15 years 8 months ago
Learning Bayesian Classifiers from Gene-Expression MicroArray Data
Computing methods that allow the efficient and accurate processing of experimentally gathered data play a crucial role in biological research. The aim of this paper is to present a...
Andrea Bosin, Nicoletta Dessì, Diego Libera...