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DAC
2010
ACM
15 years 7 months ago
Instruction cache locking using temporal reuse profile
The performance of most embedded systems is critically dependent on the average memory access latency. Improving the cache hit rate can have significant positive impact on the per...
Yun Liang, Tulika Mitra
ALGORITHMICA
2010
112views more  ALGORITHMICA 2010»
15 years 7 months ago
On Sorting, Heaps, and Minimum Spanning Trees
Let A be a set of size m. Obtaining the first k m elements of A in ascending order can be done in optimal O(m + k log k) time. We present Incremental Quicksort (IQS), an algorith...
Gonzalo Navarro, Rodrigo Paredes
APPML
2007
154views more  APPML 2007»
15 years 7 months ago
Comparison of distances between measures
The problem of optimal transportation between a set of sources and a set of wells has become recently the object of new mathematical models generalizing the Monge-Kantorovich prob...
Jean-Michel Morel, Filippo Santambrogio
BMCBI
2010
112views more  BMCBI 2010»
15 years 7 months ago
Orientation-dependent backbone-only residue pair scoring functions for fixed backbone protein design
Background: Empirical scoring functions have proven useful in protein structure modeling. Most such scoring functions depend on protein side chain conformations. However, backbone...
Andrew J. Bordner
BMCBI
2010
137views more  BMCBI 2010»
15 years 7 months ago
Improving pairwise sequence alignment accuracy using near-optimal protein sequence alignments
Background: While the pairwise alignments produced by sequence similarity searches are a powerful tool for identifying homologous proteins - proteins that share a common ancestor ...
Michael L. Sierk, Michael E. Smoot, Ellen J. Bass,...