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» Comparing and Combining Profiles
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133
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BMCBI
2006
129views more  BMCBI 2006»
15 years 19 days ago
Improved alignment quality by combining evolutionary information, predicted secondary structure and self-organizing maps
Background: Protein sequence alignment is one of the basic tools in bioinformatics. Correct alignments are required for a range of tasks including the derivation of phylogenetic t...
Tomas Ohlson, Varun Aggarwal, Arne Elofsson, Rober...
TREC
2001
15 years 1 months ago
The Bias Problem and Language Models in Adaptive Filtering
We used the YFILTER filtering system for experiments on updating profiles and setting thresholds. We developed a new method of using language models for updating profiles that is ...
Yi Zhang 0001, James P. Callan
92
Voted
AI
2004
Springer
15 years 14 days ago
Stable repeated strategies for information exchange between two autonomous agents
This paper deals with the problem of designing a strategy profile which will enable collaborative interaction between agents. In particular, we consider the problem of information...
Rina Azoulay-Schwartz, Sarit Kraus
BMCBI
2010
101views more  BMCBI 2010»
15 years 21 days ago
Hidden Markov model speed heuristic and iterative HMM search procedure
Background: Profile hidden Markov models (profile-HMMs) are sensitive tools for remote protein homology detection, but the main scoring algorithms, Viterbi or Forward, require con...
L. Steven Johnson, Sean R. Eddy, Elon Portugaly
100
Voted
BMCBI
2007
116views more  BMCBI 2007»
15 years 18 days ago
MED: a new non-supervised gene prediction algorithm for bacterial and archaeal genomes
Background: Despite a remarkable success in the computational prediction of genes in Bacteria and Archaea, a lack of comprehensive understanding of prokaryotic gene structures pre...
Huaiqiu Zhu, Gang-Qing Hu, Yi-Fan Yang, Jin Wang, ...