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IJON
2006
109views more  IJON 2006»
15 years 4 months ago
Integrating the improved CBP model with kernel SOM
In this paper, we first design a more generalized network model, Improved CBP, based on the same structure as Circular BackPropagation (CBP) proposed by Ridella et al. The novelty ...
Qun Dai, Songcan Chen
BMCBI
2005
113views more  BMCBI 2005»
15 years 3 months ago
Normal uniform mixture differential gene expression detection for cDNA microarrays
Background: One of the primary tasks in analysing gene expression data is finding genes that are differentially expressed in different samples. Multiple testing issues due to the ...
Nema Dean, Adrian E. Raftery
BMCBI
2005
109views more  BMCBI 2005»
15 years 3 months ago
Genome comparison without alignment using shortest unique substrings
Background: Sequence comparison by alignment is a fundamental tool of molecular biology. In this paper we show how a number of sequence comparison tasks, including the detection o...
Bernhard Haubold, Nora Pierstorff, Friedrich M&oum...
BMCBI
2005
162views more  BMCBI 2005»
15 years 3 months ago
Accelerated probabilistic inference of RNA structure evolution
Background: Pairwise stochastic context-free grammars (Pair SCFGs) are powerful tools for evolutionary analysis of RNA, including simultaneous RNA sequence alignment and secondary...
Ian Holmes
BMCBI
2005
126views more  BMCBI 2005»
15 years 3 months ago
An algorithm for automatic evaluation of the spot quality in two-color DNA microarray experiments
Background: Although DNA microarray technologies are very powerful for the simultaneous quantitative characterization of thousands of genes, the quality of the obtained experiment...
Eugene Novikov, Emmanuel Barillot