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RECOMB
2008
Springer
15 years 10 months ago
BayCis: A Bayesian Hierarchical HMM for Cis-Regulatory Module Decoding in Metazoan Genomes
The transcriptional regulatory sequences in metazoan genomes often consist of multiple cis-regulatory modules (CRMs). Each CRM contains locally enriched occurrences of binding site...
Tien-ho Lin, Pradipta Ray, Geir Kjetil Sandve, Sel...
IEEEPACT
2006
IEEE
15 years 3 months ago
Compiling for stream processing
This paper describes a compiler for stream programs that efficiently schedules computational kernels and stream memory operations, and allocates on-chip storage. Our compiler uses...
Abhishek Das, William J. Dally, Peter R. Mattson
103
Voted
ISPDC
2010
IEEE
14 years 8 months ago
Resource-Aware Compiler Prefetching for Many-Cores
—Super-scalar, out-of-order processors that can have tens of read and write requests in the execution window place significant demands on Memory Level Parallelism (MLP). Multi- ...
George C. Caragea, Alexandros Tzannes, Fuat Keceli...
HIPC
2009
Springer
14 years 7 months ago
Integrating and optimizing transactional memory in a data mining middleware
As the size of available datasets in various domains is growing rapidly, there is an increasing need for scaling data mining implementations. Coupled with the current trends in co...
Vignesh T. Ravi, Gagan Agrawal
FCCM
2011
IEEE
241views VLSI» more  FCCM 2011»
14 years 1 months ago
Multilevel Granularity Parallelism Synthesis on FPGAs
— Recent progress in High-Level Synthesis (HLS) es has helped raise the abstraction level of FPGA programming. However implementation and performance evaluation of the HLS-genera...
Alexandros Papakonstantinou, Yun Liang, John A. St...