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» Comparing sequence scaffolds
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97
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RECOMB
2005
Springer
16 years 1 months ago
A Framework for Orthology Assignment from Gene Rearrangement Data
Abstract. Gene rearrangements have been used successfully in phylogenetic reconstruction and comparative genomics, but usually under the assumption that all genomes have the same g...
Krister M. Swenson, Nicholas D. Pattengale, Bernar...
117
Voted
RECOMB
2004
Springer
16 years 1 months ago
Learning Regulatory Network Models that Represent Regulator States and Roles
Abstract. We present an approach to inferring probabilistic models of generegulatory networks that is intended to provide a more mechanistic representation of transcriptional regul...
Keith Noto, Mark Craven
84
Voted
RECOMB
2003
Springer
16 years 1 months ago
Designing seeds for similarity search in genomic DNA
Large-scale comparison of genomic DNA is of fundamental importance in annotating functional elements of genomes. To perform large comparisons efficiently, BLAST (Methods: Companio...
Jeremy Buhler, Uri Keich, Yanni Sun
VLDB
2005
ACM
123views Database» more  VLDB 2005»
16 years 1 months ago
Querying XML streams
Efficient querying of XML streams will be one of the fundamental features of next-generation information systems. In this paper we propose the TurboXPath path processor, which acce...
Vanja Josifovski, Marcus Fontoura, Attila Barta
VLDB
2007
ACM
119views Database» more  VLDB 2007»
16 years 1 months ago
Path and cache conscious prefetching (PCCP)
Main memory cache performance continues to play an important role in determining the overall performance of object-oriented, object-relational and XML databases. An effective metho...
Zhen He, Alonso Marquez