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» Comparing the Optimal Performance of Parallel Architectures
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200
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MST
2010
146views more  MST 2010»
14 years 10 months ago
The Cache-Oblivious Gaussian Elimination Paradigm: Theoretical Framework, Parallelization and Experimental Evaluation
We consider triply-nested loops of the type that occur in the standard Gaussian elimination algorithm, which we denote by GEP (or the Gaussian Elimination Paradigm). We present tw...
Rezaul Alam Chowdhury, Vijaya Ramachandran
137
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DATE
2008
IEEE
106views Hardware» more  DATE 2008»
15 years 10 months ago
Retargetable Code Optimization for Predicated Execution
Retargetable C compilers are key components of today’s embedded processor design platforms for quickly obtaining compiler support and performing early processor architecture exp...
Manuel Hohenauer, Felix Engel, Rainer Leupers, Ger...
136
Voted
ICSM
2007
IEEE
15 years 9 months ago
A Maintainable Software Architecture for Fast and Modular Bioinformatics Sequence Search
Bioinformaticists use the Basic Local Alignment Search Tool (BLAST) to characterize an unknown sequence by comparing it against a database of known sequences, thus detecting evolu...
Jeremy S. Archuleta, Eli Tilevich, Wu-chun Feng
147
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ISCA
1996
IEEE
130views Hardware» more  ISCA 1996»
15 years 7 months ago
Informing Memory Operations: Providing Memory Performance Feedback in Modern Processors
Memory latency is an important bottleneck in system performance that cannot be adequately solved by hardware alone. Several promising software techniques have been shown to addres...
Mark Horowitz, Margaret Martonosi, Todd C. Mowry, ...
141
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JPDC
2007
167views more  JPDC 2007»
15 years 3 months ago
On the design of high-performance algorithms for aligning multiple protein sequences on mesh-based multiprocessor architectures
In this paper, we address the problem of multiple sequence alignment (MSA) for handling very large number of proteins sequences on mesh-based multiprocessor architectures. As the ...
Diana H. P. Low, Bharadwaj Veeravalli, David A. Ba...