We consider triply-nested loops of the type that occur in the standard Gaussian elimination algorithm, which we denote by GEP (or the Gaussian Elimination Paradigm). We present tw...
Retargetable C compilers are key components of today’s embedded processor design platforms for quickly obtaining compiler support and performing early processor architecture exp...
Manuel Hohenauer, Felix Engel, Rainer Leupers, Ger...
Bioinformaticists use the Basic Local Alignment Search Tool (BLAST) to characterize an unknown sequence by comparing it against a database of known sequences, thus detecting evolu...
Memory latency is an important bottleneck in system performance that cannot be adequately solved by hardware alone. Several promising software techniques have been shown to addres...
Mark Horowitz, Margaret Martonosi, Todd C. Mowry, ...
In this paper, we address the problem of multiple sequence alignment (MSA) for handling very large number of proteins sequences on mesh-based multiprocessor architectures. As the ...
Diana H. P. Low, Bharadwaj Veeravalli, David A. Ba...