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» Comparing transformation methods for DNA microarray data
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BMCBI
2008
160views more  BMCBI 2008»
15 years 2 months ago
Predicting cancer involvement of genes from heterogeneous data
Background: Systematic approaches for identifying proteins involved in different types of cancer are needed. Experimental techniques such as microarrays are being used to characte...
Ramon Aragues, Chris Sander, Baldo Oliva
BMCBI
2007
120views more  BMCBI 2007»
15 years 2 months ago
Recognition of interferon-inducible sites, promoters, and enhancers
Background: Computational analysis of gene regulatory regions is important for prediction of functions of many uncharacterized genes. With this in mind, search of the target genes...
Elena A. Ananko, Yury V. Kondrakhin, Tatyana I. Me...
FCCM
2011
IEEE
311views VLSI» more  FCCM 2011»
14 years 5 months ago
String Matching in Hardware Using the FM-Index
—String matching is a ubiquitous problem that arises in a wide range of applications in computing, e.g., packet routing, intrusion detection, web querying, and genome analysis. D...
Edward Fernandez, Walid Najjar, Stefano Lonardi
PSB
2004
15 years 3 months ago
Phylogenetic Motif Detection by Expectation-Maximization on Evolutionary Mixtures
ct The preferential conservation of transcription factor binding sites implies that non-coding sequence data from related species will prove a powerful asset to motif discovery. We...
Alan M. Moses, Derek Y. Chiang, Michael B. Eisen
95
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IWINAC
2005
Springer
15 years 7 months ago
Separation of Extracellular Spikes: When Wavelet Based Methods Outperform the Principle Component Analysis
spike separation is a basic prerequisite for analyzing of the cooperative neural behavior and neural code when registering extracelluIarly. Final performance of any spike sorting m...
Alexey N. Pavlov, Valeri A. Makarov, Ioulia Makaro...