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» Comparing transformation methods for DNA microarray data
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SIGMOD
2007
ACM
169views Database» more  SIGMOD 2007»
16 years 2 months ago
Genome-scale disk-based suffix tree indexing
With the exponential growth of biological sequence databases, it has become critical to develop effective techniques for storing, querying, and analyzing these massive data. Suffi...
Benjarath Phoophakdee, Mohammed J. Zaki
CAV
2006
Springer
86views Hardware» more  CAV 2006»
15 years 5 months ago
The Power of Hybrid Acceleration
This paper addresses the problem of computing symbolically the set of reachable configurations of a linear hybrid automaton. A solution proposed in earlier work consists in explori...
Bernard Boigelot, Frédéric Herbretea...
BMCBI
2008
131views more  BMCBI 2008»
15 years 2 months ago
Major copy proportion analysis of tumor samples using SNP arrays
Background: Single nucleotide polymorphisms (SNPs) are the most common genetic variations in the human genome and are useful as genomic markers. Oligonucleotide SNP microarrays ha...
Cheng Li, Rameen Beroukhim, Barbara A. Weir, Wendy...
BMCBI
2006
149views more  BMCBI 2006»
15 years 1 months ago
HeatMapper: powerful combined visualization of gene expression profile correlations, genotypes, phenotypes and sample characteri
Background: Accurate interpretation of data obtained by unsupervised analysis of large scale expression profiling studies is currently frequently performed by visually combining s...
Roel G. W. Verhaak, Mathijs A. Sanders, Maarten A....
BMCBI
2007
148views more  BMCBI 2007»
15 years 1 months ago
WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences
Background: This work addresses the problem of detecting conserved transcription factor binding sites and in general regulatory regions through the analysis of sequences from homo...
Giulio Pavesi, Federico Zambelli, Graziano Pesole