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» Comparing transformation methods for DNA microarray data
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JMLR
2010
125views more  JMLR 2010»
14 years 9 months ago
On utility of gene set signatures in gene expression-based cancer class prediction
Machine learning methods that can use additional knowledge in their inference process are central to the development of integrative bioinformatics. Inclusion of background knowled...
Minca Mramor, Marko Toplak, Gregor Leban, Tomaz Cu...
138
Voted
BMCBI
2007
148views more  BMCBI 2007»
15 years 2 months ago
Computation of significance scores of unweighted Gene Set Enrichment Analyses
Background: Gene Set Enrichment Analysis (GSEA) is a computational method for the statistical evaluation of sorted lists of genes or proteins. Originally GSEA was developed for in...
Andreas Keller, Christina Backes, Hans-Peter Lenho...
ICASSP
2009
IEEE
15 years 9 months ago
A scale transform based method for rhythmic similarity of music
This paper introduces scale transforms to measure rhythmic similarity between two musical pieces. The rhythm of a piece of music is described by the scale transform magnitude, com...
Andre Holzapfel, Yannis Stylianou
112
Voted
BMCBI
2007
182views more  BMCBI 2007»
15 years 2 months ago
Identifying regulatory targets of cell cycle transcription factors using gene expression and ChIP-chip data
Background: ChIP-chip data, which indicate binding of transcription factors (TFs) to DNA regions in vivo, are widely used to reconstruct transcriptional regulatory networks. Howev...
Wei-Sheng Wu, Wen-Hsiung Li, Bor-Sen Chen
JBI
2006
107views Bioinformatics» more  JBI 2006»
15 years 2 months ago
Knowledge guided analysis of microarray data
To microarray expression data analysis, it is well accepted that biological knowledge-guided clustering techniques show more advantages than pure mathematical techniques. In this ...
Zhuo Fang, Jiong Yang, Yixue Li, Qing-ming Luo, Le...