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» Comparing transformation methods for DNA microarray data
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BMCBI
2011
14 years 9 months ago
Support vector machines-based identification of alternative splicing in Arabidopsis thaliana from whole-genome tiling arrays
Background: Alternative splicing (AS) is a process which generates several distinct mRNA isoforms from the same gene by splicing different portions out of the precursor transcript...
Johannes Eichner, Georg Zeller, Sascha Laubinger, ...
163
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DILS
2008
Springer
15 years 4 months ago
Semi Supervised Spectral Clustering for Regulatory Module Discovery
We propose a novel semi-supervised clustering method for the task of gene regulatory module discovery. The technique uses data on dna binding as prior knowledge to guide the proces...
Alok Mishra, Duncan Gillies
BMCBI
2005
104views more  BMCBI 2005»
15 years 2 months ago
A statistical approach for array CGH data analysis
Background: Microarray-CGH experiments are used to detect and map chromosomal imbalances, by hybridizing targets of genomic DNA from a test and a reference sample to sequences imm...
Franck Picard, Stéphane Robin, Marc Laviell...
CORR
2006
Springer
93views Education» more  CORR 2006»
15 years 2 months ago
Functional dissipation microarrays for classification
In this article, we describe a new method of extracting information from signals, called functional dissipation, that proves to be very effective for enhancing classification of h...
D. Napoletani, Daniele C. Struppa, T. Sauer, V. Mo...
79
Voted
BMCBI
2008
98views more  BMCBI 2008»
15 years 2 months ago
Assessing probe-specific dye and slide biases in two-color microarray data
Background: A primary reason for using two-color microarrays is that the use of two samples labeled with different dyes on the same slide, that bind to probes on the same spot, is...
Ruixiao Lu, Geun-Cheol Lee, Michael Shultz, Chris ...