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» Comparing transformation methods for DNA microarray data
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115
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NIPS
2003
15 years 3 months ago
Generalised Propagation for Fast Fourier Transforms with Partial or Missing Data
Discrete Fourier transforms and other related Fourier methods have been practically implementable due to the fast Fourier transform (FFT). However there are many situations where ...
Amos J. Storkey
236
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ICDE
2003
IEEE
149views Database» more  ICDE 2003»
16 years 3 months ago
Indexing Weighted-Sequences in Large Databases
We present an index structure for managing weightedsequences in large databases. A weighted-sequence is defined as a two-dimensional structure where each element in the sequence i...
Haixun Wang, Chang-Shing Perng, Wei Fan, Sanghyun ...
BMCBI
2010
160views more  BMCBI 2010»
15 years 2 months ago
Annotation of gene promoters by integrative data-mining of ChIP-seq Pol-II enrichment data
Background: Use of alternative gene promoters that drive widespread cell-type, tissue-type or developmental gene regulation in mammalian genomes is a common phenomenon. Chromatin ...
Ravi Gupta, Priyankara Wikramasinghe, Anirban Bhat...
BIBE
2005
IEEE
107views Bioinformatics» more  BIBE 2005»
15 years 8 months ago
DSIM: A Distance-Based Indexing Method for Genomic Sequences
In this paper, we propose a Distance-based Sequence Indexing Method (DSIM) for indexing and searching genome databases. Borrowing the idea of video compression, we compress the ge...
Xia Cao, Beng Chin Ooi, HweeHwa Pang, Kian-Lee Tan...
ICDM
2003
IEEE
154views Data Mining» more  ICDM 2003»
15 years 7 months ago
MaPle: A Fast Algorithm for Maximal Pattern-based Clustering
Pattern-based clustering is important in many applications, such as DNA micro-array data analysis, automatic recommendation systems and target marketing systems. However, pattern-...
Jian Pei, Xiaoling Zhang, Moonjung Cho, Haixun Wan...