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» Comparing transformation methods for DNA microarray data
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BMCBI
2010
155views more  BMCBI 2010»
15 years 2 months ago
A bi-ordering approach to linking gene expression with clinical annotations in gastric cancer
Background: In the study of cancer genomics, gene expression microarrays, which measure thousands of genes in a single assay, provide abundant information for the investigation of...
Fan Shi, Christopher Leckie, Geoff MacIntyre, Izha...
BMCBI
2010
118views more  BMCBI 2010»
15 years 2 months ago
Predicting nucleosome positioning using a duration Hidden Markov Model
Background: The nucleosome is the fundamental packing unit of DNAs in eukaryotic cells. Its detailed positioning on the genome is closely related to chromosome functions. Increasi...
Liqun Xi, Yvonne Fondufe-Mittendorf, Lei Xia, Jare...
BMCBI
2007
156views more  BMCBI 2007»
15 years 2 months ago
Large-scale clustering of CAGE tag expression data
Background: Recent analyses have suggested that many genes possess multiple transcription start sites (TSSs) that are differentially utilized in different tissues and cell lines. ...
Kazuro Shimokawa, Yuko Okamura-Oho, Takio Kurita, ...
BMCBI
2007
154views more  BMCBI 2007»
15 years 2 months ago
h-Profile plots for the discovery and exploration of patterns in gene expression data with an application to time course data
Background: An ever increasing number of techniques are being used to find genes with similar profiles from microarray studies. Visualization of gene expression profiles can aid t...
Yvonne E. Pittelkow, Susan R. Wilson
ICASSP
2010
IEEE
15 years 27 days ago
Unidirectional graph-based wavelet transforms for efficient data gathering in sensor networks
We design lifting-based wavelet transforms for any arbitrary communication graph in a wireless sensor network (WSN). Since transmitting raw data bits along the routing trees in WS...
Sunil K. Narang, Godwin Shen, Antonio Ortega