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» Comparing transformation methods for DNA microarray data
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BMCBI
2005
140views more  BMCBI 2005»
15 years 2 months ago
Dissecting systems-wide data using mixture models: application to identify affected cellular processes
Background: Functional analysis of data from genome-scale experiments, such as microarrays, requires an extensive selection of differentially expressed genes. Under many condition...
J. Peter Svensson, Renée X. de Menezes, Ing...
117
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BILDMED
2009
180views Algorithms» more  BILDMED 2009»
15 years 3 months ago
Automatic Needle Segmentation in 3D Ultrasound Data Using a Hough Transform Approach
Segmentation in ultrasound data is a very challenging field of research in medical image processing. This article presents a method for automatic segmentation of biopsy needles and...
Philipp Hartmann, Matthias Baumhauer, Jens Rasswei...
117
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BMCBI
2010
118views more  BMCBI 2010»
15 years 2 months ago
svdPPCS: an effective singular value decomposition-based method for conserved and divergent co-expression gene module identifica
Background: Comparative analysis of gene expression profiling of multiple biological categories, such as different species of organisms or different kinds of tissue, promises to e...
Wensheng Zhang, Andrea Edwards, Wei Fan, Dongxiao ...
GECCO
2004
Springer
132views Optimization» more  GECCO 2004»
15 years 7 months ago
Optimizing Topology and Parameters of Gene Regulatory Network Models from Time-Series Experiments
Abstract. In this paper we address the problem of finding gene regulatory networks from experimental DNA microarray data. Different approaches to infer the dependencies of gene r...
Christian Spieth, Felix Streichert, Nora Speer, An...
BIODATAMINING
2008
135views more  BIODATAMINING 2008»
15 years 2 months ago
Fast Gene Ontology based clustering for microarray experiments
Background: Analysis of a microarray experiment often results in a list of hundreds of diseaseassociated genes. In order to suggest common biological processes and functions for t...
Kristian Ovaska, Marko Laakso, Sampsa Hautaniemi