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» Comparing transformation methods for DNA microarray data
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SSDBM
2010
IEEE
220views Database» more  SSDBM 2010»
15 years 6 months ago
Prefix Tree Indexing for Similarity Search and Similarity Joins on Genomic Data
Similarity search and similarity join on strings are important for applications such as duplicate detection, error detection, data cleansing, or comparison of biological sequences....
Astrid Rheinländer, Martin Knobloch, Nicky Ho...
KDD
2002
ACM
183views Data Mining» more  KDD 2002»
16 years 2 months ago
E-CAST: A Data Mining Algorithm for Gene Expression Data
Data clustering methods have been proven to be a successful data mining technique in the analysis of gene expression data. The Cluster affinity search technique (CAST) developed b...
Abdelghani Bellaachia, David Portnoy, Yidong Chen,...
WSCG
2003
174views more  WSCG 2003»
15 years 3 months ago
An Efficient Algorithm for Codebook Design in Transform Vector Quantization
In this paper, a new wavelet-domain codebook design algorithm is proposed for image coding. The method utilizes mean-squared error and variance based selection schemes for good cl...
Momotaz Begum, Nurun Nahar, Kaneez Fatimah, M. K. ...
BIBE
2003
IEEE
183views Bioinformatics» more  BIBE 2003»
15 years 7 months ago
Effective Indexing and Filtering for Similarity Search in Large Biosequence Databases
We present a multi-dimensional indexing approach for fast sequence similarity search in DNA and protein databases. In particular, we propose effective transformations of subsequen...
Ozgur Ozturk, Hakan Ferhatosmanoglu
WABI
2001
Springer
162views Bioinformatics» more  WABI 2001»
15 years 6 months ago
A Simple Hyper-Geometric Approach for Discovering Putative Transcription Factor Binding Sites
A central issue in molecular biology is understanding the regulatory mechanisms that control gene expression. The recent flood of genomic and postgenomic data opens the way for co...
Yoseph Barash, Gill Bejerano, Nir Friedman