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» Comparison of Centralities for Biological Networks
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BMCBI
2006
81views more  BMCBI 2006»
14 years 11 months ago
Multipolar representation of protein structure
Background: That the structure determines the function of proteins is a central paradigm in biology. However, protein functions are more directly related to cooperative effects at...
Apostol Gramada, Philip E. Bourne
105
Voted
BMCBI
2010
121views more  BMCBI 2010»
14 years 8 months ago
A grammar-based distance metric enables fast and accurate clustering of large sets of 16S sequences
Background: We propose a sequence clustering algorithm and compare the partition quality and execution time of the proposed algorithm with those of a popular existing algorithm. T...
David J. Russell, Samuel F. Way, Andrew K. Benson,...
97
Voted
RECOMB
2005
Springer
15 years 11 months ago
Constructing a Smallest Refining Galled Phylogenetic Network
Reticulation events occur frequently in many types of species. Therefore, to develop accurate methods for reconstructing phylogenetic networks in order to describe evolutionary his...
Trinh N. D. Huynh, Jesper Jansson, Nguyen Bao Nguy...
94
Voted
SIMULATION
2010
178views more  SIMULATION 2010»
14 years 5 months ago
Application-level Simulation for Network Security
We introduce and describe a novel network simulation tool called NeSSi (Network Security Simulator). NeSSi incorporates a variety of features relevant to network security distingu...
Stephan Schmidt, Rainer Bye, Joël Chinnow, Ka...
119
Voted
BMCBI
2008
122views more  BMCBI 2008»
14 years 11 months ago
Reconstructing networks of pathways via significance analysis of their intersections
Background: Significance analysis at single gene level may suffer from the limited number of samples and experimental noise that can severely limit the power of the chosen statist...
Mirko Francesconi, Daniel Remondini, Nicola Nerett...