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» Comparison of Clique-Listing Algorithms
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BMCBI
2007
152views more  BMCBI 2007»
15 years 5 months ago
A cross-species alignment tool (CAT)
Background: The main two sorts of automatic gene annotation frameworks are ab initio and alignment-based, the latter splitting into two sub-groups. The first group is used for int...
Heng Li, Liang Guan, Tao Liu, Yiran Guo, Wei-Mou Z...
BMCBI
2008
146views more  BMCBI 2008»
15 years 5 months ago
Rank-based edge reconstruction for scale-free genetic regulatory networks
Background: The reconstruction of genetic regulatory networks from microarray gene expression data has been a challenging task in bioinformatics. Various approaches to this proble...
Guanrao Chen, Peter Larsen, Eyad Almasri, Yang Dai
BMCBI
2010
101views more  BMCBI 2010»
15 years 5 months ago
Hidden Markov model speed heuristic and iterative HMM search procedure
Background: Profile hidden Markov models (profile-HMMs) are sensitive tools for remote protein homology detection, but the main scoring algorithms, Viterbi or Forward, require con...
L. Steven Johnson, Sean R. Eddy, Elon Portugaly
157
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GECCO
2010
Springer
194views Optimization» more  GECCO 2010»
15 years 9 months ago
Mirrored variants of the (1, 2)-CMA-ES compared on the noisy BBOB-2010 testbed
Derandomization by means of mirrored samples has been recently introduced to enhance the performances of (1, λ) and (1 + 2) Evolution-Strategies (ESs) with the aim of designing f...
Anne Auger, Dimo Brockhoff, Nikolaus Hansen
BMCBI
2008
126views more  BMCBI 2008»
15 years 5 months ago
Relating gene expression data on two-component systems to functional annotations in Escherichia coli
Background: Obtaining physiological insights from microarray experiments requires computational techniques that relate gene expression data to functional information. Traditionall...
Anne M. Denton, Jianfei Wu, Megan K. Townsend, Pre...