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» Comparison of Conceptual Graphs
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BMCBI
2010
189views more  BMCBI 2010»
14 years 10 months ago
Efficient parallel and out of core algorithms for constructing large bi-directed de Bruijn graphs
Background: Assembling genomic sequences from a set of overlapping reads is one of the most fundamental problems in computational biology. Algorithms addressing the assembly probl...
Vamsi Kundeti, Sanguthevar Rajasekaran, Hieu Dinh,...
PAMI
2007
154views more  PAMI 2007»
14 years 9 months ago
Graph Embedding and Extensions: A General Framework for Dimensionality Reduction
—Over the past few decades, a large family of algorithms—supervised or unsupervised; stemming from statistics or geometry theory—has been designed to provide different soluti...
Shuicheng Yan, Dong Xu, Benyu Zhang, HongJiang Zha...
ICS
1993
Tsinghua U.
15 years 1 months ago
Graph Contraction for Physical Optimization Methods: A Quality-Cost Tradeoff for Mapping Data on Parallel Computers
Mapping data to parallel computers aims at minimizing the execution time of the associated application. However, it can take an unacceptable amount of time in comparison with the ...
Nashat Mansour, Ravi Ponnusamy, Alok N. Choudhary,...
BIOINFORMATICS
2008
172views more  BIOINFORMATICS 2008»
14 years 10 months ago
Fitting a geometric graph to a protein-protein interaction network
Motivation: Finding a good network null model for protein-protein interaction (PPI) networks is a fundamental issue. Such a model would provide insights into the interplay between...
Desmond J. Higham, Marija Rasajski, Natasa Przulj
BMCBI
2005
120views more  BMCBI 2005»
14 years 9 months ago
SpectralNET - an application for spectral graph analysis and visualization
Background: Graph theory provides a computational framework for modeling a variety of datasets including those emerging from genomics, proteomics, and chemical genetics. Networks ...
Joshua J. Forman, Paul A. Clemons, Stuart L. Schre...