We developed a multithreaded parallel implementation of a sequence alignment algorithm that is able to align whole genomes with reliable output and reasonable cost. This paper pres...
Juan del Cuvillo, Xinmin Tian, Guang R. Gao, Milin...
String comparison is a critical issue in many application domains, including speech recognition, contents search, and bioinformatics. The similarity between two strings of lengths...
The widespread use of Grid technology and distributed compute power, with all its inherent benefits, will only be established if the use of that technology can be guaranteed effic...
Shared Memory is an interesting communication paradigm for SMP machines and clusters. Weak consistency models have been proposed to improve efficiency of shared memory applications...
Commercial HPC applications are often run on clusters that use the Microsoft Windows operating system and need an MPI implementation that runs efficiently in the Windows environmen...
Jayesh Krishna, Pavan Balaji, Ewing L. Lusk, Rajee...