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» Compiled hardware acceleration of Molecular Dynamics code
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GI
2009
Springer
15 years 2 months ago
Massively-Parallel Simulation of Biochemical Systems
: Understanding biological evolution prompts for a detailed understanding of the realized phenotype. Biochemical and gene regulatory dynamics are a cornerstone for the physiology o...
Jens Ackermann, Paul Baecher, Thorsten Franzel, Mi...
ASPLOS
2011
ACM
14 years 1 months ago
Sponge: portable stream programming on graphics engines
Graphics processing units (GPUs) provide a low cost platform for accelerating high performance computations. The introduction of new programming languages, such as CUDA and OpenCL...
Amir Hormati, Mehrzad Samadi, Mark Woh, Trevor N. ...
FPL
2009
Springer
132views Hardware» more  FPL 2009»
15 years 1 months ago
Binary Synthesis with multiple memory banks targeting array references
High-Level Synthesis (HLS) is the field of transforming a high-level programming language, such as C, into a register transfer level(RTL) description of the design. In HLS, Binary...
Yosi Ben-Asher, Nadav Rotem
CASES
2008
ACM
14 years 11 months ago
Efficient code caching to improve performance and energy consumption for java applications
Java applications rely on Just-In-Time (JIT) compilers or adaptive compilers to generate and optimize binary code at runtime to boost performance. In conventional Java Virtual Mac...
Yu Sun, Wei Zhang
FCCM
2007
IEEE
146views VLSI» more  FCCM 2007»
15 years 4 months ago
Mitrion-C Application Development on SGI Altix 350/RC100
This paper provides an evaluation of SGI® RASC™ RC100 technology from a computational science software developer’s perspective. A brute force implementation of a two-point an...
Volodymyr V. Kindratenko, Robert J. Brunner, Adam ...