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» Compiler Optimizations for Improving Data Locality
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BMCBI
2007
87views more  BMCBI 2007»
14 years 9 months ago
'Unite and conquer': enhanced prediction of protein subcellular localization by integrating multiple specialized tools
Background: Knowing the subcellular location of proteins provides clues to their function as well as the interconnectivity of biological processes. Dozens of tools are available f...
Yao Qing Shen, Gertraud Burger
BMCBI
2008
138views more  BMCBI 2008»
14 years 9 months ago
Methods for simultaneously identifying coherent local clusters with smooth global patterns in gene expression profiles
Background: The hierarchical clustering tree (HCT) with a dendrogram [1] and the singular value decomposition (SVD) with a dimension-reduced representative map [2] are popular met...
Yin-Jing Tien, Yun-Shien Lee, Han-Ming Wu, Chun-Ho...
HPDC
2005
IEEE
15 years 3 months ago
Genetic algorithm based automatic data partitioning scheme for HPF
good data partitioning scheme is the need of the time. However it is very diflcult to arrive at a good solution as the number of possible dutupartitionsfor a given real lifeprogra...
Sunil Kumar Anand, Y. N. Srikant
ACMMSP
2005
ACM
101views Hardware» more  ACMMSP 2005»
15 years 3 months ago
Transparent pointer compression for linked data structures
64-bit address spaces are increasingly important for modern applications, but they come at a price: pointers use twice as much memory, reducing the effective cache capacity and m...
Chris Lattner, Vikram S. Adve
BIBE
2006
IEEE
119views Bioinformatics» more  BIBE 2006»
15 years 3 months ago
Large Grain Size Stochastic Optimization Alignment
DNA sequence alignment is a critical step in identifying homology between organisms. The most widely used alignment program, ClustalW, is known to suffer from the local minima pro...
Perry Ridge, Hyrum Carroll, Dan Sneddon, Mark J. C...