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ISPASS
2005
IEEE
15 years 3 months ago
Performance Characterization of Java Applications on SMT Processors
As Java is emerging as one of the major programming languages in software development, studying how Java applications behave on recent SMT processors is of great interest. This pa...
Wei Huang, Jiang Lin, Zhao Zhang, J. Morris Chang
BMCBI
2010
153views more  BMCBI 2010»
14 years 9 months ago
Pash 3.0: A versatile software package for read mapping and integrative analysis of genomic and epigenomic variation using massi
Background: Massively parallel sequencing readouts of epigenomic assays are enabling integrative genome-wide analyses of genomic and epigenomic variation. Pash 3.0 performs sequen...
Cristian Coarfa, Fuli Yu, Christopher A. Miller, Z...
SCAM
2005
IEEE
15 years 3 months ago
A Fast Analysis for Thread-Local Garbage Collection with Dynamic Class Loading
Long-running, heavily multi-threaded, Java server applications make stringent demands of garbage collector (GC) performance. Synchronisation of all application threads before garb...
Richard E. Jones, Andy C. King
81
Voted
IEEEINTERACT
2003
IEEE
15 years 2 months ago
Procedure Cloning and Integration for Converting Parallelism from Coarse to Fine Grain
This paper introduces a method for improving program run-time performance by gathering work in an application and executing it efficiently in an integrated thread. Our methods ext...
Won So, Alexander G. Dean
97
Voted
BMCBI
2011
14 years 4 months ago
ATAQS: A computational software tool for high throughput transition optimization and validation for selected reaction monitoring
Background: Since its inception, proteomics has essentially operated in a discovery mode with the goal of identifying and quantifying the maximal number of proteins in a sample. I...
Mi-Youn K. Brusniak, Sung-Tat Kwok, Mark Christian...