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BMCBI
2008
107views more  BMCBI 2008»
15 years 4 months ago
Extended Newick: it is time for a standard representation of phylogenetic networks
Background: Phylogenetic trees resulting from molecular phylogenetic analysis are available in Newick format from specialized databases but when it comes to phylogenetic networks,...
Gabriel Cardona, Francesc Rosselló, Gabriel...
BIB
2007
139views more  BIB 2007»
15 years 4 months ago
Petri net modelling of biological networks
Mathematical modelling is increasingly used to get insights into the functioning of complex biological networks. In this context, Petri nets (PNs) have recently emerged as a promi...
Claudine Chaouiya
UC
2009
Springer
15 years 11 months ago
Resource-Competing Oscillator Network as a Model of Amoeba-Based Neurocomputer
Abstract. An amoeboid organism, Physarum, exhibits rich spatiotemporal oscillatory behavior and various computational capabilities. Previously, the authors created a recurrent neur...
Masashi Aono, Yoshito Hirata, Masahiko Hara, Kazuy...
TSP
2010
14 years 11 months ago
Selection policy-induced reduction mappings for Boolean networks
Developing computational models paves the way to understanding, predicting, and influencing the long-term behavior of genomic regulatory systems. However, several major challenges ...
Ivan Ivanov, Plamen Simeonov, Noushin Ghaffari, Xi...
DAC
2001
ACM
16 years 5 months ago
MicroNetwork-Based Integration for SOCs
In this paper, we describe the concept of using an on-chip network as the fundamental communication architecture for a complex SOC design. We describe some of the salient features...
Drew Wingard